SoDegreeOfAnisotropyQuantification engine More...

#include <ImageViz/Engines/ImageAnalysis/Morphometry/SoDegreeOfAnisotropyQuantification.h>

Inheritance diagram for SoDegreeOfAnisotropyQuantification:

Classes
class	SbAnisotropyDegreeDetail
	Results details of degree of anisotropy global measure. More...

Public Member Functions
	SoDegreeOfAnisotropyQuantification ()
	Constructor.

Public Member Functions inherited from SoImageVizEngine
virtual SoType	getTypeId () const
	Returns the type identifier for this specific instance.

virtual void	startEvaluate ()
	Evaluate engine and dependencies in another thread without blocking the current one.

virtual void	waitEvaluate ()
	Wait for the end of engine evaluation.

virtual void	abortEvaluate ()
	Abort current processing as soon as possible.

virtual bool	isEvaluating ()
	Returns true if the engine evaluation is in progress.

Public Member Functions inherited from SoEngine
virtual int	getOutputs (SoEngineOutputList &list) const
	Returns a list of outputs in this engine.

SoEngineOutput *	getOutput (const SbName &outputName) const
	Returns a reference to the engine output with the given name.

SbBool	getOutputName (const SoEngineOutput *output, SbName &outputName) const
	Returns (in outputName) the name of the engine output (output).

SoEngine *	copy () const
	Creates and returns an exact copy of the engine.

Public Member Functions inherited from SoFieldContainer
void	setToDefaults ()
	Sets all fields in this object to their default values.

SbBool	hasDefaultValues () const
	Returns TRUE if all of the object's fields have their default values.

SbBool	fieldsAreEqual (const SoFieldContainer *fc) const
	Returns TRUE if this object's fields are exactly equal to fc's fields.

void	copyFieldValues (const SoFieldContainer *fc, SbBool copyConnections=FALSE)
	Copies the contents of fc's fields into this object's fields.

SoNONUNICODE SbBool	set (const char *fieldDataString)
	Sets one or more fields in this object to the values specified in the given string, which should be a string in the Open Inventor file format.

SbBool	set (const SbString &fieldDataString)
	Sets one or more fields in this object to the values specified in the given string, which should be a string in the Open Inventor file format.

void	get (SbString &fieldDataString)
	Returns the values of the fields of this object in the Open Inventor ASCII file format in the given string.

virtual int	getFields (SoFieldList &list) const
	Appends references to all of this object's fields to resultList, and returns the number of fields appended.

virtual int	getAllFields (SoFieldList &list) const
	Returns a list of fields, including the eventIn's and eventOut's.

virtual SoField *	getField (const SbName &fieldName) const
	Returns a the field of this object whose name is fieldName.

virtual SoField *	getEventIn (const SbName &fieldName) const
	Returns a the eventIn with the given name.

virtual SoField *	getEventOut (const SbName &fieldName) const
	Returns the eventOut with the given name.

SbBool	getFieldName (const SoField *field, SbName &fieldName) const
	Returns the name of the given field in the fieldName argument.

SbBool	enableNotify (SbBool flag)
	Notification at this Field Container is enabled (if flag == TRUE) or disabled (if flag == FALSE).

SbBool	isNotifyEnabled () const
	Notification is the process of telling interested objects that this object has changed.

virtual void	setUserData (void *data)
	Sets application data.

void *	getUserData (void) const
	Gets user application data.

Public Member Functions inherited from SoBase
virtual void	touch ()
	Marks an instance as modified, simulating a change to it.

virtual SbName	getName () const
	Returns the name of an instance.

virtual void	setName (const SbName &name)
	Sets the name of an instance.

void	setSynchronizable (const bool b)
	Sets this to be a ScaleViz synchronizable object.

bool	isSynchronizable () const
	Gets the ScaleViz synchronizable state of this object.

Public Member Functions inherited from SoRefCounter
void	ref () const
	Adds a reference to an instance.

void	unref () const
	Removes a reference from an instance.

void	unrefNoDelete () const
	unrefNoDelete() should be called when it is desired to decrement the reference count, but not delete the instance if this brings the reference count to zero.

int	getRefCount () const
	Returns current reference count.

void	lock () const
	lock this instance.

void	unlock () const
	unlock this instance.

Public Member Functions inherited from SoTypedObject
SbBool	isOfType (const SoType &type) const
	Returns TRUE if this object is of the type specified in type or is derived from that type.

template<typename TypedObjectClass >
SbBool	isOfType () const
	Returns TRUE if this object is of the type of class TypedObjectClass or is derived from that class.

Public Attributes
SoSFEnum	computeMode
	Select the compute Mode (2D or 3D or AUTO) Use enum ComputeMode.

SoSFImageDataAdapter	inBinaryImage
	The input binary image.

SoSFInt32	interceptDistance
	The distance between two intercept lines.

SoImageVizEngineAnalysisOutput< SbAnisotropyDegreeDetail >	outResult
	The output measure result.

Public Attributes inherited from SoImageVizEngine
SbEventHandler< EventArg & >	onBegin
	Event raised when the processing begins.

SbEventHandler< EventArg & >	onEnd
	Event raised when processing ends and the result is available.

SbEventHandler< EventArg & >	onProgress
	Event raised while processing is running.

Additional Inherited Members
Public Types inherited from SoImageVizEngine
enum	ComputeMode { MODE_2D = 0 , MODE_3D = 1 , MODE_AUTO = 2 }
	Compute Mode This enum specifies whether the main input will be interpreted as a 3D volume or a stack of 2D images for processing. More...

enum	Neighborhood3d { CONNECTIVITY_6 = 0 , CONNECTIVITY_18 = 1 , CONNECTIVITY_26 = 2 }
	Neighborhood Connectivity 3D. More...

Static Public Member Functions inherited from SoImageVizEngine
static SoType	getClassTypeId ()
	Returns the type identifier for this class.

Static Public Member Functions inherited from SoEngine
static SoType	getClassTypeId ()
	Returns the type identifier for the SoEngine class.

static SoEngine *	getByName (const SbName &name)
	Looks up engine(s) by name.

static int	getByName (const SbName &name, SoEngineList &list)
	Looks up engine(s) by name.

Static Public Member Functions inherited from SoFieldContainer
static SoType	getClassTypeId ()
	Returns the type of this class.

Static Public Member Functions inherited from SoBase
static SoType	getClassTypeId ()
	Returns type identifier for this class.

Static Public Member Functions inherited from SoTypedObject
static SoType	getClassTypeId ()
	Returns the type identifier for this class.

Detailed Description

SoDegreeOfAnisotropyQuantification engine

The SoDegreeOfAnisotropyQuantification engine measures a 3D symmetry

For an introduction, see section Morphometry.

This engine computes a measure of 3D symmetry. It is a good indicator to detect structural alignments along particular directional axis. This engine uses mean intercept length and eigen value analysis.

Mean intercept length analysis allows the user to measure isotropy of a structure. It proceeds sending a set of oriented ray through the binarised 3D image volume. For each ray, the number of objects encountered is counted. A set of discreet angles are processed as described and for each one an averaged is done by using a regularly spaced grid of rays. The SoDegreeOfAnisotropyQuantification::interceptDistance field is the distance between two lines intercept. The pitch angle is fixed at 10 degrees (not radians).

A classical eigen value analysis of this cloud of values (mean of number of intersect in function of angle) is then done. This analysis allows one to extract a minimal and a maximal eigen value. The closest these values are, the less the structural anisotropy is. Indeed maximum and minimum eigen values equality means that their is no privileged structural direction.

$Degree ~ of ~ Anisotropy = \left( 1-\left[\frac{mineigenvalue}{maxeigenvalue}\right] \right)$