Open Inventor Release 2023.2.3
 
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SoImageStackProjectionProcessing3d Class Reference

ImageViz SoImageStackProjectionProcessing3d engine More...

#include <ImageViz/Engines/ImageManipulation/StackOperations/SoImageStackProjectionProcessing3d.h>

+ Inheritance diagram for SoImageStackProjectionProcessing3d:

Public Types

enum  ProjectionMode {
  INTENSITY_MAXIMA = 0 ,
  GRADIENT_MAXIMA = 1 ,
  PROJECTION = 2 ,
  INTENSITY_MINIMA = 3 ,
  MEDIAN = 4 ,
  MEAN = 5 ,
  VARIANCE = 6 ,
  ENTROPY = 7 ,
  ENERGY = 8
}
 
enum  GradientOperator {
  GAUSSIAN_GRADIENT = 0 ,
  MORPHOLOGICAL_GRADIENT = 1 ,
  RECURSIVE_GRADIENT = 2
}
 
- Public Types inherited from SoImageVizEngine
enum  ComputeMode {
  MODE_2D = 0 ,
  MODE_3D = 1 ,
  MODE_AUTO = 2
}
 Compute Mode This enum specifies whether the main input will be interpreted as a 3D volume or a stack of 2D images for processing. More...
 
enum  Neighborhood3d {
  CONNECTIVITY_6 = 0 ,
  CONNECTIVITY_18 = 1 ,
  CONNECTIVITY_26 = 2
}
 Neighborhood Connectivity 3D. More...
 

Public Member Functions

 SoImageStackProjectionProcessing3d ()
 Constructor.
 
- Public Member Functions inherited from SoImageVizEngine
virtual SoType getTypeId () const
 Returns the type identifier for this specific instance.
 
virtual void startEvaluate ()
 Evaluate engine and dependencies in another thread without blocking the current one.
 
virtual void waitEvaluate ()
 Wait for the end of engine evaluation.
 
virtual void abortEvaluate ()
 Abort current processing as soon as possible.
 
virtual bool isEvaluating ()
 Returns true if the engine evaluation is in progress.
 
- Public Member Functions inherited from SoEngine
virtual int getOutputs (SoEngineOutputList &list) const
 Returns a list of outputs in this engine.
 
SoEngineOutputgetOutput (const SbName &outputName) const
 Returns a reference to the engine output with the given name.
 
SbBool getOutputName (const SoEngineOutput *output, SbName &outputName) const
 Returns (in outputName) the name of the engine output (output).
 
SoEnginecopy () const
 Creates and returns an exact copy of the engine.
 
- Public Member Functions inherited from SoFieldContainer
void setToDefaults ()
 Sets all fields in this object to their default values.
 
SbBool hasDefaultValues () const
 Returns TRUE if all of the object's fields have their default values.
 
SbBool fieldsAreEqual (const SoFieldContainer *fc) const
 Returns TRUE if this object's fields are exactly equal to fc's fields.
 
void copyFieldValues (const SoFieldContainer *fc, SbBool copyConnections=FALSE)
 Copies the contents of fc's fields into this object's fields.
 
SoNONUNICODE SbBool set (const char *fieldDataString)
 Sets one or more fields in this object to the values specified in the given string, which should be a string in the Open Inventor file format.
 
SbBool set (const SbString &fieldDataString)
 Sets one or more fields in this object to the values specified in the given string, which should be a string in the Open Inventor file format.
 
void get (SbString &fieldDataString)
 Returns the values of the fields of this object in the Open Inventor ASCII file format in the given string.
 
virtual int getFields (SoFieldList &list) const
 Appends references to all of this object's fields to resultList, and returns the number of fields appended.
 
virtual int getAllFields (SoFieldList &list) const
 Returns a list of fields, including the eventIn's and eventOut's.
 
virtual SoFieldgetField (const SbName &fieldName) const
 Returns a the field of this object whose name is fieldName.
 
virtual SoFieldgetEventIn (const SbName &fieldName) const
 Returns a the eventIn with the given name.
 
virtual SoFieldgetEventOut (const SbName &fieldName) const
 Returns the eventOut with the given name.
 
SbBool getFieldName (const SoField *field, SbName &fieldName) const
 Returns the name of the given field in the fieldName argument.
 
SbBool enableNotify (SbBool flag)
 Notification at this Field Container is enabled (if flag == TRUE) or disabled (if flag == FALSE).
 
SbBool isNotifyEnabled () const
 Notification is the process of telling interested objects that this object has changed.
 
virtual void setUserData (void *data)
 Sets application data.
 
void * getUserData (void) const
 Gets user application data.
 
- Public Member Functions inherited from SoBase
virtual void touch ()
 Marks an instance as modified, simulating a change to it.
 
virtual SbName getName () const
 Returns the name of an instance.
 
virtual void setName (const SbName &name)
 Sets the name of an instance.
 
void setSynchronizable (const bool b)
 Sets this to be a ScaleViz synchronizable object.
 
bool isSynchronizable () const
 Gets the ScaleViz synchronizable state of this object.
 
- Public Member Functions inherited from SoRefCounter
void ref () const
 Adds a reference to an instance.
 
void unref () const
 Removes a reference from an instance.
 
void unrefNoDelete () const
 unrefNoDelete() should be called when it is desired to decrement the reference count, but not delete the instance if this brings the reference count to zero.
 
int getRefCount () const
 Returns current reference count.
 
void lock () const
 lock this instance.
 
void unlock () const
 unlock this instance.
 
- Public Member Functions inherited from SoTypedObject
SbBool isOfType (const SoType &type) const
 Returns TRUE if this object is of the type specified in type or is derived from that type.
 
template<typename TypedObjectClass >
SbBool isOfType () const
 Returns TRUE if this object is of the type of class TypedObjectClass or is derived from that class.
 

Public Attributes

SoSFImageDataAdapter inImage
 A 3d volume representing a stack of 2d images.
 
SoSFEnum projectionMode
 The type of process.
 
SoSFInt32 smoothingSize
 The size for the smooth process.
 
SoSFEnum gradientOperator
 The type of process.
 
SoImageVizEngineOutput< SoSFImageDataAdapter, SoImageDataAdapter * > outImage
 The output image.
 
SoImageVizEngineOutput< SoSFImageDataAdapter, SoImageDataAdapter * > outLabelImage
 The output map label image.
 
- Public Attributes inherited from SoImageVizEngine
SbEventHandler< EventArg & > onBegin
 Event raised when the processing begins.
 
SbEventHandler< EventArg & > onEnd
 Event raised when processing ends and the result is available.
 
SbEventHandler< EventArg & > onProgress
 Event raised while processing is running.
 

Additional Inherited Members

- Static Public Member Functions inherited from SoImageVizEngine
static SoType getClassTypeId ()
 Returns the type identifier for this class.
 
- Static Public Member Functions inherited from SoEngine
static SoType getClassTypeId ()
 Returns the type identifier for the SoEngine class.
 
static SoEnginegetByName (const SbName &name)
 Looks up engine(s) by name.
 
static int getByName (const SbName &name, SoEngineList &list)
 Looks up engine(s) by name.
 
- Static Public Member Functions inherited from SoFieldContainer
static SoType getClassTypeId ()
 Returns the type of this class.
 
- Static Public Member Functions inherited from SoBase
static SoType getClassTypeId ()
 Returns type identifier for this class.
 
- Static Public Member Functions inherited from SoTypedObject
static SoType getClassTypeId ()
 Returns the type identifier for this class.
 

Detailed Description

ImageViz SoImageStackProjectionProcessing3d engine

The SoImageStackProjectionProcessing3d engine creates a single image containing selected pixels from a stack of input images.

For example, when you make several acquisitions of the same object with different acquisition conditions, the images you get may not have the same focused areas. The SoImageStackProjectionProcessing3d engine examines all the images to get the best values of the sequence and build the resulting image.

When projectionMode is one of INTENSITY_MAXIMA, GRADIENT_MAXIMA or INTENSITY_MINIMA, the engine also generates an outLabelImage that shows the contribution source (i.e. the sequence number of the image from the input stack) on the result image outImage.

This engine can produce higher quality results than using the standard Maximum/Minimum Intensity Projection (MIP) rendering in VolumeViz.

For color images, it works in the HSL color space and uses only the lightness.

SEE ALSO

SoGradientOperatorProcessing2d

FILE FORMAT/DEFAULT

    ImageStackProjectionProcessing3d {
    inImage NULL
    projectionMode GRADIENT_MAXIMA
    smoothingSize 5
    gradientOperator MORPHOLOGICAL_GRADIENT
    }


Library references: zstack

Definition at line 76 of file SoImageStackProjectionProcessing3d.h.

Member Enumeration Documentation

◆ GradientOperator

Enumerator
GAUSSIAN_GRADIENT 

Compute a gaussian gradient (convolution with derivatives of gaussian function along the stack direction).

MORPHOLOGICAL_GRADIENT 

Compute a morphological gradient (see SoMorphologicalGradientProcessing for definition).

RECURSIVE_GRADIENT 

Compute a recursive gradient (Canny-Deriche on stack direction).

Definition at line 146 of file SoImageStackProjectionProcessing3d.h.

◆ ProjectionMode

Enumerator
INTENSITY_MAXIMA 

Select the pixel with the highest value of the sequence.

GRADIENT_MAXIMA 

Select the pixel with the highest gradient.

This mode enables the gradientOperator field.

PROJECTION 

Sum all values of the sequence.

INTENSITY_MINIMA 

Select the pixel with the lowest value of the sequence.

MEDIAN 

Select the pixel which is the median of the sequence.

MEAN 

Compute the average of the sequence.

VARIANCE 

Compute the variance of the sequence.

ENTROPY 

Compute the entropy of the sequence based on this formula:

\[Entropy= -\sum_{i \in seq} {P(x_i)*log(P(x_i))}\]

where $P(x_i)$ is the probability to have a pixel with value $x_i$ (it's the number of those pixels divided by the total number of pixels).

ENERGY 

Compute the energy of the sequence based on this formula:

\[Energy= \sum_{i \in seq} {P(x_i)^2}\]

Definition at line 91 of file SoImageStackProjectionProcessing3d.h.

Constructor & Destructor Documentation

◆ SoImageStackProjectionProcessing3d()

SoImageStackProjectionProcessing3d::SoImageStackProjectionProcessing3d ( )

Constructor.

Member Data Documentation

◆ gradientOperator

SoSFEnum SoImageStackProjectionProcessing3d::gradientOperator

The type of process.

Use enum GradientOperator. Default is MORPHOLOGICAL_GRADIENT

Definition at line 164 of file SoImageStackProjectionProcessing3d.h.

◆ inImage

SoSFImageDataAdapter SoImageStackProjectionProcessing3d::inImage

A 3d volume representing a stack of 2d images.

Default value is NULL. Supported types include: grayscale binary label image.

Definition at line 86 of file SoImageStackProjectionProcessing3d.h.

◆ outImage

SoImageVizEngineOutput<SoSFImageDataAdapter,SoImageDataAdapter*> SoImageStackProjectionProcessing3d::outImage

The output image.

Default value is NULL. Supported types include: grayscale binary label color image.

Definition at line 167 of file SoImageStackProjectionProcessing3d.h.

◆ outLabelImage

SoImageVizEngineOutput<SoSFImageDataAdapter,SoImageDataAdapter*> SoImageStackProjectionProcessing3d::outLabelImage

The output map label image.

Each label represents the z plane used in output image. Default value is NULL. Supported types include: label image.

Definition at line 170 of file SoImageStackProjectionProcessing3d.h.

◆ projectionMode

SoSFEnum SoImageStackProjectionProcessing3d::projectionMode

The type of process.

Use enum ProjectionMode. Default is GRADIENT_MAXIMA

Definition at line 137 of file SoImageStackProjectionProcessing3d.h.

◆ smoothingSize

SoSFInt32 SoImageStackProjectionProcessing3d::smoothingSize

The size for the smooth process.

Default value is 5.

Definition at line 141 of file SoImageStackProjectionProcessing3d.h.


The documentation for this class was generated from the following file: